This is the community page for the EpiExplorer project. 

Here you can tell us how can we make EpiExplorer more useful to you. Feel free to suggest new features, datasets, visualizations or vote for features suggested by other users. 


Bug reports are also eagerly anticipated, especially on Friday night


Tell us how to make it better. We'll listen

+2

Search for similar regions

Halachev 7 years ago 0
Find all genomic locations that are similar to a given one w.r.t. certain criteria.
+1

EpiExplorer to allow providing of tissue/cell lines for custom datasets and adapt its visualizations

Halachev 5 years ago 0
When uploading a dataset, the user can provide the tissue/cell line for which the data was computed.

EpiExplorer can then use the same tissue as default (if available) for its visualizations.


+1
Answered

I am not been able to save the PNG. Clicking or write clicking on it doesnt allow me save the PNG locally

Anonymous 5 years ago • updated by Halachev 5 years ago 1
I am not been able to save the PNG. Clicking or write clicking on it doesnt allow me save the PNG locally

 

Bug
+1

Upload multiple annotation datasets

Yassen 5 years ago • updated by Halachev 4 years ago 2

Allow uploading multiple annotation datasets (e.g. as BED files) using the same options. This would guarantee that the annotations are comparable, as they all use the same genome version, strand information, etc. and are tested w.r.t. the same default annotations available in EpiExplorer.

+1

History of the last several visualizations

Anonymous 6 years ago 0
+1

Please allow per-sequence (in a dataset) annotation instead of whole dataset annotation

Anonymous 6 years ago 0
The current annotation format shows percentage / information for the whole dataset, it will be useful to have the annotation for each sequence in the dataset independently, Thanks
+1

Dynamically update a visualization based on the slider movement

Halachev 6 years ago • updated 6 years ago 0
Currently every slider on the left side is couple with a visualization on the right. There is interest if the slider can be reached independently of the visualization, for example filter by length while looking at the summary visualization. Then the goal will be to dynamically show the changes(maybe similar to comparison mode, in gray the current numbers in orange the numbers if the refinment was selected).
+1
Completed

Rename reference dataset to shuffle shuffle dataset.

albrecht 6 years ago • updated by Halachev 6 years ago 0
Datasets Ideas
Answer
Halachev 6 years ago

+1

API to access the data.

albrecht 6 years ago • updated 6 years ago 1
Visualization Feature Ideas
0

Mouse mm10 genome

elisa.redl 1 year ago 0

Would it be possible to get the mouse mm10 genome available?