This is the community page for the EpiExplorer project. 

Here you can tell us how can we make EpiExplorer more useful to you. Feel free to suggest new features, datasets, visualizations or vote for features suggested by other users. 


Bug reports are also eagerly anticipated, especially on Friday night


Tell us how to make it better. We'll listen

  1. Foorum: Feedback
+2

Search for similar regions

Halachev 14 aastat tagasi • 0
Find all genomic locations that are similar to a given one w.r.t. certain criteria.
+1

EpiExplorer to allow providing of tissue/cell lines for custom datasets and adapt its visualizations

Halachev 12 aastat tagasi • 0
When uploading a dataset, the user can provide the tissue/cell line for which the data was computed.

EpiExplorer can then use the same tissue as default (if available) for its visualizations.


+1
Answered

I am not been able to save the PNG. Clicking or write clicking on it doesnt allow me save the PNG locally

Anonüümne 12 aastat tagasi • uuendaja Halachev 12 aastat tagasi • 1
I am not been able to save the PNG. Clicking or write clicking on it doesnt allow me save the PNG locally

 

Bug
+1

Upload multiple annotation datasets

Yassen 12 aastat tagasi • uuendaja Halachev 11 aastat tagasi • 2

Allow uploading multiple annotation datasets (e.g. as BED files) using the same options. This would guarantee that the annotations are comparable, as they all use the same genome version, strand information, etc. and are tested w.r.t. the same default annotations available in EpiExplorer.

+1

History of the last several visualizations

Anonüümne 13 aastat tagasi • 0
+1

Please allow per-sequence (in a dataset) annotation instead of whole dataset annotation

Anonüümne 13 aastat tagasi • 0
The current annotation format shows percentage / information for the whole dataset, it will be useful to have the annotation for each sequence in the dataset independently, Thanks
+1

Dynamically update a visualization based on the slider movement

Halachev 13 aastat tagasi • uuendatud 13 aastat tagasi • 0
Currently every slider on the left side is couple with a visualization on the right. There is interest if the slider can be reached independently of the visualization, for example filter by length while looking at the summary visualization. Then the goal will be to dynamically show the changes(maybe similar to comparison mode, in gray the current numbers in orange the numbers if the refinment was selected).
+1
Lõpetatud

Rename reference dataset to shuffle shuffle dataset.

albrecht 13 aastat tagasi • uuendaja Halachev 13 aastat tagasi • 0
Datasets Ideas
Vasta
Halachev 13 aastat tagasi

+1

API to access the data.

albrecht 13 aastat tagasi • uuendatud 13 aastat tagasi • 1
Visualization Feature Ideas
0

Hallo! Thank you for developing and sharing these useful tool! I am very new in this field, so I started by following your tutorial, and I have obtained very interesting results in the study of the Differentially methylated regions that I am studying. I

Maria Tropea 4 aastat tagasi • 0

Hallo!

Thank you for developing and sharing these useful tool! I am very new in this field, so I started by following your tutorial, and I have obtained very interesting results in the study of the Differentially methylated regions that I am studying.

I contact you because yesterday, after about a month, I needed to process new data but I was unable to use epiexplorer nor to load new data. I am attaching the screen photo to show the error message I see. Could you please help me to understand if I do something wrong or inform me if the webtool is not working?

Thanks in advance.

Maria Tropea

University of Catania, Sicily


    

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