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Export of control regions

Anonymous 11 years ago updated by Mario Saare 10 years ago 2
Great tool. Any chance to get an export function for the matched control regions that are generated by epiexplorer?


You can export the control regions. 


The control regions are an EpiExplorer dataset of its own. This means that you can interact with it and export the full dataset or any subset the same way as any other EpiExplorer dataset. You can read moreif you open the "
Saving, exporting and sharing EpiExplorer results
" slideshow from the starting page of EpiExplorer, more specifically slide 6.

Hi!

I would like to combine the % of overlapping regions retrieved from EpiExplorer and the statistical significance found with Genomic HyperBrowser. However, the HyperBrowser does not give the % of overlaps of the control regions (random regions that are generated to calculate the null distribution). EpiExplorer gives this %, but I couldn't find how are the control regions calculated. From the region lengths plots I can see that the control regions have the same length distribution as my data, but what about the gaps between regions? Are these preserved as well? Then I would know which 'preservation rule' to pick in the HyperBrowser so that it would randomize the positions in the same way.

Best regards,

Mario